PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_A4B5D1816.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 109aa    MW: 12729.2 Da    PI: 9.7567
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_A4B5D1816.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-1614104199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +t+s+v+   +l lpk+f+++h  k  ++  +tl de+g + + ++  rk +    l++ Wk F+  ++L +gD +vF++++r 
  Traes_7AS_A4B5D1816.1  14 FVKPMTQSHVTGGFWLGLPKQFCTRHLPK--RDEWITLVDEKGAESDSYYLARKWG----LSAQWKAFAINHKLVDGDCLVFERIDRA 95 
                            89************************433..4558***************444444....9999*******************88777 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v+++r+
  Traes_7AS_A4B5D1816.1  96 KF--KVHIIRQ 104
                            77..9999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2210105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-2011105IPR015300DNA-binding pseudobarrel domain
CDDcd100174.75E-2313103No hitNo description
PfamPF023629.1E-1514104IPR003340B3 DNA binding domain
SMARTSM010192.0E-1614105IPR003340B3 DNA binding domain
PROSITE profilePS508639.84114105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MAEQLQGKLD XXSFVKPMTQ SHVTGGFWLG LPKQFCTRHL PKRDEWITLV DEKGAESDSY  60
YLARKWGLSA QWKAFAINHK LVDGDCLVFE RIDRAKFKVH IIRQSSYYK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3572002e-94AK357200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1048A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227844.16e-50PREDICTED: B3 domain-containing protein Os06g0194400-like
RefseqXP_010227845.16e-50PREDICTED: B3 domain-containing protein Os06g0194400-like
SwissprotQ69V362e-43Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLW5HH454e-76W5HH45_WHEAT; Uncharacterized protein
STRINGMLOC_76431.15e-51(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-41B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]